Re-run this search with the SEG filter switched off
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YER117W
(137 letters)
Database: Seq/AA.fsa
85,676 sequences; 40,655,052 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
YER117W Chr5 (396765..396806,397278..397649) [414 bp, 137 aa] Pr... 276 5e-97 YBL087C Chr2 complement(59818..60189,60694..60735) [414 bp, 137 ... 276 5e-97 CORT0F02820 c6 complement(578218..578589,578964..579005) [414 bp... 252 1e-87 CPAR2_601830 Chr6 complement(433820..434191,434538..434579) [414... 252 1e-87 LELG_04811 c7 (539587..539628,540229..540600) [414 bp, 137 aa] 250 9e-87 orf19.3504 Chr6 complement(425041..425412,425928..425969) [414 b... 249 1e-86 SPAPADRAFT_63277 c7 complement(438168..438539,438910..438951) [4... 248 4e-86 CTRG_02906 c3 complement(1942953..1943324,1943760..1943801) [414... 248 4e-86 CAWG_05159 c7 (617572..617617,618133..618500) [414 bp, 137 aa] 248 5e-86 PICST_89371 Chr4 complement(455461..455832,456303..456344) [414 ... 247 1e-85 DEHA2C04884g Chr3 (444246..444287,444544..444915) [414 bp, 137 a... 246 5e-85 PGUG_05105 c6 complement(900610..901023) [414 bp, 137 aa] 245 7e-85 clus_CGOB_00022 c4 complement(1146644..1147015,1147227..1147268)... 244 1e-84 CANTEDRAFT_121943 c15 (598717..598746,599043..599414) [402 bp, 1... 236 2e-81 CD36_62220 Chr6 complement(438921..439292,439791..439796) [378 b... 232 8e-80 PICST_89472 Chr5 complement(1698773..1699171) [399 bp, 132 aa] p... 62 1e-12 CTRG_05235 c8 complement(11738..12136) [399 bp, 132 aa] 61 2e-12 CORT0E04890 c5 (1100060..1100470) [411 bp, 136 aa] S. cerevisiae... 61 3e-12 CPAR2_302710 Chr3 (660989..661402) [414 bp, 137 aa] S. cerevisia... 60 4e-12 LELG_03861 c5 (513468..513875) [408 bp, 135 aa] 60 6e-12 SPAPADRAFT_60997 c4 (16426..16815) [390 bp, 129 aa] 60 8e-12 CAWG_04408 c6 complement(6665..7063) [399 bp, 132 aa] 59 1e-11 orf19.5684 Chr5 complement(15077..15475) [399 bp, 132 aa] Predic... 59 1e-11 CD36_50160 Chr5 complement(30040..30438) [399 bp, 132 aa] Simil... 59 1e-11 CANTEDRAFT_103580 c9 complement(295023..295421) [399 bp, 132 aa] 54 1e-09 CLUG_05805 c8 complement(463602..464000) [399 bp, 132 aa] 53 2e-09 DEHA2B10296g Chr2 complement(812131..812529) [399 bp, 132 aa] hi... 49 1e-07 PGUG_01682 c2 (884488..884886) [399 bp, 132 aa] 47 6e-07 CPAR2_104920 Chr1 complement(1073301..1074671) [1371 bp, 456 aa]... 30 2.0 CLUG_03431 c4 complement(501737..503080) [1344 bp, 447 aa] 29 2.8 CORT0B06120 c2 complement(1301647..1303017) [1371 bp, 456 aa] ph... 29 3.5 LELG_01862 c2 (1381016..1382431) [1416 bp, 471 aa] 28 6.5 PGUG_02184 c2 complement(1755774..1759325) [3552 bp, 1183 aa] 28 6.7
>YER117W Chr5 (396765..396806,397278..397649) [414 bp, 137 aa] Protein
component of the large (60S) ribosomal subunit,
identical to Rpl23Ap and has similarity to E. coli L14
and rat L23 ribosomal proteins
Length = 137
Score = 276 bits (705), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA
Sbjct: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPRVASNSGVVV
Sbjct: 121 ECADLWPRVASNSGVVV 137
>YBL087C Chr2 complement(59818..60189,60694..60735) [414 bp, 137 aa] Protein
component of the large (60S) ribosomal subunit,
identical to Rpl23Bp and has similarity to E. coli L14
and rat L23 ribosomal proteins
Length = 137
Score = 276 bits (705), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA
Sbjct: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPRVASNSGVVV
Sbjct: 121 ECADLWPRVASNSGVVV 137
>CORT0F02820 c6 complement(578218..578589,578964..579005) [414 bp, 137 aa]
putative ribosomal protein
Length = 137
Score = 252 bits (644), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 121/137 (88%), Positives = 130/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIVVRQAK WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CPAR2_601830 Chr6 complement(433820..434191,434538..434579) [414 bp, 137 aa]
Putaive ribosomal protein
Length = 137
Score = 252 bits (644), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 121/137 (88%), Positives = 130/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIVVRQAK WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQAKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>LELG_04811 c7 (539587..539628,540229..540600) [414 bp, 137 aa]
Length = 137
Score = 250 bits (638), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 120/137 (87%), Positives = 129/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGAIMNCADNSGARNLY++AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAIMNCADNSGARNLYVLAVKGVGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIV+RQ+K WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>orf19.3504 Chr6 complement(425041..425412,425928..425969) [414 bp, 137 aa]
Putative ribosomal protein; genes encoding cytoplasmic
ribosomal subunits, translation factors, and tRNA
synthetases are downregulated upon phagocytosis by
murine macrophage
Length = 137
Score = 249 bits (637), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 118/137 (86%), Positives = 130/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAA+ GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIV+RQ+K WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>SPAPADRAFT_63277 c7 complement(438168..438539,438910..438951) [414 bp, 137 aa]
Length = 137
Score = 248 bits (633), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 119/137 (86%), Positives = 129/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGAIMNCADNSGARNLY++AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAIMNCADNSGARNLYVLAVKGIGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIV+RQ+K WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CTRG_02906 c3 complement(1942953..1943324,1943760..1943801) [414 bp, 137 aa]
Length = 137
Score = 248 bits (633), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 118/137 (86%), Positives = 129/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG G+RLNRLPAA+ GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGVGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIV+RQ+K WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CAWG_05159 c7 (617572..617617,618133..618500) [414 bp, 137 aa]
Length = 137
Score = 248 bits (633), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 130/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+S+ LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAA+ GDMVMA
Sbjct: 1 MSGSGASGNKFRMSVSLPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIV+RQ+K WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>PICST_89371 Chr4 complement(455461..455832,456303..456344) [414 bp, 137 aa]
predicted protein
Length = 137
Score = 247 bits (630), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 129/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LPVGA+MNCADNSGARNLY++AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPVGAVMNCADNSGARNLYVLAVKGVGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIV+RQ++ WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVIRQSRPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>DEHA2C04884g Chr3 (444246..444287,444544..444915) [414 bp, 137 aa] similar to
uniprot|P04451 Saccharomyces cerevisiae YER117W RPL23B
Protein component of the large (60S) ribosomal
subunit,identical to Rpl23Ap and has similarity to E.
coli L14 and rat L23 ribosomal proteins
Length = 137
Score = 246 bits (627), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 129/137 (94%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SLGLPVGA++NC DNSGARNLYI++VKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLGLPVGAVVNCCDNSGARNLYIVSVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKK+MPAIVVRQA+ WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKIMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>PGUG_05105 c6 complement(900610..901023) [414 bp, 137 aa]
Length = 137
Score = 245 bits (625), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 127/137 (92%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SL LP GA+MNC DNSGARNLY++AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLALPTGAVMNCCDNSGARNLYVLAVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIVVRQA+ WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQARPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>clus_CGOB_00022 c4 complement(1146644..1147015,1147227..1147268) [414 bp, 137 aa]
annotated by CGOB
Length = 137
Score = 244 bits (624), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 128/137 (93%)
Query: 1 MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA 60
MSG+GA G KFR+SLGLPVGA++NC DNSGARNLYI+AVKG G+RLNRLPAAS GDMVMA
Sbjct: 1 MSGSGASGNKFRMSLGLPVGAVVNCCDNSGARNLYILAVKGFGARLNRLPAASAGDMVMA 60
Query: 61 TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK 120
TVKKGKPELRKKVMPAIVVRQ++ WRR+DG +LYFEDNAGVI NPKGEMKGSAITGPV K
Sbjct: 61 TVKKGKPELRKKVMPAIVVRQSRPWRRKDGTYLYFEDNAGVIVNPKGEMKGSAITGPVAK 120
Query: 121 ECADLWPRVASNSGVVV 137
ECADLWPR+ASNSGVVV
Sbjct: 121 ECADLWPRIASNSGVVV 137
>CANTEDRAFT_121943 c15 (598717..598746,599043..599414) [402 bp, 133 aa]
Length = 133
Score = 236 bits (603), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 112/132 (84%), Positives = 124/132 (93%)
Query: 6 AQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKG 65
+ G KFR+SLGLPVGA++NC DNSGARNLYI+AVKG G++LNRLPAAS GDMVMATVKKG
Sbjct: 2 SSGNKFRMSLGLPVGAVLNCCDNSGARNLYILAVKGFGAKLNRLPAASAGDMVMATVKKG 61
Query: 66 KPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125
KPELRKKVMPAIVVRQ++ WRR+DGV+LYFEDNAGVI NPKGEMKGSAITGPV KECADL
Sbjct: 62 KPELRKKVMPAIVVRQSRPWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADL 121
Query: 126 WPRVASNSGVVV 137
WPR+ASNSGVVV
Sbjct: 122 WPRIASNSGVVV 133
>CD36_62220 Chr6 complement(438921..439292,439791..439796) [378 bp, 125 aa]
Similar to S. cerevisiae RPL23A/B; spliced gene
Length = 125
Score = 232 bits (591), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 109/125 (87%), Positives = 120/125 (96%)
Query: 13 ISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKK 72
+SL LPVGA+MNCADNSGARNLY++AVKG+G+RLNRLPAA+ GDMVMATVKKGKPELRKK
Sbjct: 1 MSLALPVGAVMNCADNSGARNLYVLAVKGTGARLNRLPAAAAGDMVMATVKKGKPELRKK 60
Query: 73 VMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASN 132
VMPAIV+RQ+K WRRRDGV+LYFEDNAGVI NPKGEMKGSAITGPV KECADLWPR+ASN
Sbjct: 61 VMPAIVIRQSKPWRRRDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASN 120
Query: 133 SGVVV 137
SGVVV
Sbjct: 121 SGVVV 125
>PICST_89472 Chr5 complement(1698773..1699171) [399 bp, 132 aa] predicted
protein
Length = 132
Score = 62.0 bits (149), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + I V G L A +GD + VKK +P E+
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHGP----LNFAKVGDEITVVVKKARPLQAEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLW 126
R+ + AIVVR +RR DG + F+DNA V+ N GE G+ I+ V KE DL
Sbjct: 62 VKRRDICRAIVVRTKAPFRRPDGSVVRFDDNACVLVNKSGEPLGTRISSVVAKELRDLQ 120
>CTRG_05235 c8 complement(11738..12136) [399 bp, 132 aa]
Length = 132
Score = 61.2 bits (147), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLP--AASLGDMVMATVKKGKP---EL------ 69
++N DNSGA+ + I V L P A +GD + VKK +P EL
Sbjct: 6 TMLNVIDNSGAQVVECIKV------LRHKPHSCAQIGDRITCVVKKARPPQQELAGQTSS 59
Query: 70 ----RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125
R+ + A+VVR RR+DG + F+DNA V+ N GE G+ I+ V KE DL
Sbjct: 60 NRVKRRDICQAVVVRTRAPLRRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CORT0E04890 c5 (1100060..1100470) [411 bp, 136 aa] S. cerevisiae homolog MRPL38
is structural constituent of mitochondrial large
ribosomal subunit
Length = 136
Score = 60.8 bits (146), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 21/122 (17%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE------------ 68
++N DNSGA+ + I V R N A +GD + VK+ +P
Sbjct: 6 TLLNVIDNSGAQVVECIKV----LRHNPKSCAHIGDQITCVVKQARPTNVDSSSASSAAQ 61
Query: 69 -----LRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECA 123
R+ + A+VVRQ +RR DG + F+DNA V+ N GE G+ I+ V KE
Sbjct: 62 ASNRVKRRDICRAVVVRQRAPFRRPDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELR 121
Query: 124 DL 125
DL
Sbjct: 122 DL 123
>CPAR2_302710 Chr3 (660989..661402) [414 bp, 137 aa] S. cerevisiae homolog MRPL38
has structural constituent of ribosome and localizes to
mitochondrial large ribosomal subunit
Length = 137
Score = 60.5 bits (145), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE------------ 68
++N DNSGA+ + I V R N A +GD + VK+ +P
Sbjct: 6 TLLNVIDNSGAQVVECIKV----LRHNPKSCAHIGDQITCVVKQARPTNVDASSSGSSSA 61
Query: 69 ------LRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKEC 122
R+ + A+VVRQ +RR DG + F+DNA V+ N GE G+ I+ V KE
Sbjct: 62 QASNRVKRRDICRAVVVRQRAPFRRPDGSVVRFDDNACVLINKNGEPLGTRISSVVAKEL 121
Query: 123 ADL 125
DL
Sbjct: 122 RDL 124
>LELG_03861 c5 (513468..513875) [408 bp, 135 aa]
Length = 135
Score = 60.1 bits (144), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE------------ 68
++N DNSGA+ + I V G + A ++GD++ VKK +PE
Sbjct: 6 TLLNVIDNSGAQIVECIKVSRHGPKT----AGNIGDIITCVVKKARPEPLGPGGKVSTQL 61
Query: 69 ----LRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 121
R+ V A++VRQ RR DG + F+DNA V+ N E G+ I V KE
Sbjct: 62 ANKVKRRDVCKAVIVRQKSPLRRPDGSVIRFDDNACVLINKNKEPIGTRINSVVAKE 118
>SPAPADRAFT_60997 c4 (16426..16815) [390 bp, 129 aa]
Length = 129
Score = 59.7 bits (143), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLP--AASLGDMVMATVKKGKPEL--------- 69
+++N DNSGA + I V L P A +GD + VK+ KP
Sbjct: 6 SLLNVIDNSGALVVECIKV------LRHKPKSCAQIGDQITVVVKEAKPIADGTTSTNKV 59
Query: 70 -RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLW 126
RK + A+VVR +RR DG + F+DNA V+ N GE G+ I+ V KE DL
Sbjct: 60 KRKDICRAVVVRTRSPFRRPDGSMVKFDDNACVLINKNGEPLGTRISSVVAKELRDLQ 117
>CAWG_04408 c6 complement(6665..7063) [399 bp, 132 aa]
Length = 132
Score = 59.3 bits (142), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + I V + A +GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHKPK----SCAQIGDRITCVVKQARPLQQELTGQSSTNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125
R+ + A+VVR +R+DG + F+DNA V+ N GE G+ I+ V KE DL
Sbjct: 62 VKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>orf19.5684 Chr5 complement(15077..15475) [399 bp, 132 aa] Predicted ORF in
Assemblies 19, 20 and 21
Length = 132
Score = 59.3 bits (142), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + I V + A +GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHKPK----SCAQIGDRITCVVKQARPLQQELTGQSSTNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125
R+ + A+VVR +R+DG + F+DNA V+ N GE G+ I+ V KE DL
Sbjct: 62 VKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CD36_50160 Chr5 complement(30040..30438) [399 bp, 132 aa] Similar to S.
cerevisiae MRPL38; In S. cerevisiae: appears as two
protein spots (YmL34 and YmL38) on two-dimensional SDS
gels
Length = 132
Score = 59.3 bits (142), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + I V + A +GD + VK+ +P EL
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHKPK----SCAQIGDRITCVVKQARPLQQELTGQTSTNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125
R+ + A+VVR +R+DG + F+DNA V+ N GE G+ I+ V KE DL
Sbjct: 62 VKRRDICQAVVVRTRAPLKRKDGSVVRFDDNACVLINKNGEPLGTRISSVVAKELKDL 119
>CANTEDRAFT_103580 c9 complement(295023..295421) [399 bp, 132 aa]
Length = 132
Score = 53.9 bits (128), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
+++N DNSGA+ + I V G R A +GD + VK+ +P E+
Sbjct: 6 SLLNVIDNSGAQVVECIKVLRHGPR----NFAKVGDEITVVVKQARPLTAEITGLSANNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 121
R+ + A+VVR +RR DG + F+DNA V+ N G+ G+ ++ V +E
Sbjct: 62 VKRRDICRAVVVRTKAPFRRPDGSTIRFDDNACVLVNKNGDPLGTRVSSVVAQE 115
>CLUG_05805 c8 complement(463602..464000) [399 bp, 132 aa]
Length = 132
Score = 53.1 bits (126), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ I V G R A +GD + +K+ +P E+
Sbjct: 6 TLLNVIDNSGAQVAECIKVLRHGPR----NFAKVGDEITVVIKQARPMNTEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 121
R+ + AIVVR +RR DG + F+DNA V+ N G+ G+ ++ V KE
Sbjct: 62 VKRRDICRAIVVRTKAPFRRPDGSVVRFDDNACVLINKNGDPLGTRVSSVVAKE 115
>DEHA2B10296g Chr2 complement(812131..812529) [399 bp, 132 aa] highly similar to
uniprot|P35996 Saccharomyces cerevisiae YKL170W MRPL38
Mitochondrial ribosomal protein of the large subunit
Length = 132
Score = 48.5 bits (114), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
++N DNSGA+ I V G R A +GD + VK+ + E+
Sbjct: 6 TLLNVIDNSGAQVAECIKVLRHGPR----NFAKVGDEITVVVKQARSMNKEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLW 126
R+ + AIVVR + R DG + F+DNA V+ N G+ G+ ++ V KE +L
Sbjct: 62 VKRRDICRAIVVRTKSPFIRPDGSTVRFDDNACVLINKNGDPLGTRVSSVVAKELRELQ 120
>PGUG_01682 c2 (884488..884886) [399 bp, 132 aa]
Length = 132
Score = 47.0 bits (110), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKP---EL-------- 69
++ DNSGA+ I V G A +GD + VK+ + E+
Sbjct: 6 TLLKVIDNSGAQVAECIKVLRHGPH----NFAKVGDEITVVVKEARSLQSEITGQSANNR 61
Query: 70 --RKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL 125
R+ + A+VVR +RR DG + F+DNA V+ N G+ G+ ++ V KE D+
Sbjct: 62 VKRRDICRAVVVRTKAPFRRPDGSTVRFDDNACVLINKNGDPLGTRVSSVVAKELRDM 119
>CPAR2_104920 Chr1 complement(1073301..1074671) [1371 bp, 456 aa] Phosphorylated
protein of unknown function
Length = 456
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 69 LRKKVMPA--IVVRQAKSWR------RRDGVFLYFEDNAGVIANPKGEMKGSAITGPV 118
L+K PA V Q +WR RR+ +FL ++ V+ N +G++ S+I G +
Sbjct: 170 LKKSAPPAQPAPVHQTVTWRSPTIKYRRNEIFLNVQERVNVLMNFQGDVLRSSIDGAI 227
>CLUG_03431 c4 complement(501737..503080) [1344 bp, 447 aa]
Length = 447
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 27 DNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKV 73
D N Y +A + + SRL+++ A + + ++K P++R+KV
Sbjct: 365 DTYSGFNFYPLASQPTRSRLDKIAPAHDDETIECSIKYYNPDIRRKV 411
>CORT0B06120 c2 complement(1301647..1303017) [1371 bp, 456 aa] phosphorylated
protein of unknown function
Length = 456
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 54 LGDMVMATVKKGKPELRKKVMPAIV---VRQAKSWR------RRDGVFLYFEDNAGVIAN 104
L D + ++ KK P + V Q +WR RR+ +FL ++ V+ N
Sbjct: 154 LNDSNLGIFRRASFNPLKKSAPPVQTPPVHQTVTWRSPTIKYRRNEIFLNVQEKVNVLMN 213
Query: 105 PKGEMKGSAITGPV 118
+G++ S+I G +
Sbjct: 214 FQGDVLRSSIDGAI 227
>LELG_01862 c2 (1381016..1382431) [1416 bp, 471 aa]
Length = 471
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 77 IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPV 118
I R A RR+ +F++ E+ V+ N +GE+ S + G +
Sbjct: 202 ITWRSANIKYRRNEIFVHVEEKLNVLFNSQGELLRSYVDGAI 243
>PGUG_02184 c2 complement(1755774..1759325) [3552 bp, 1183 aa]
Length = 1183
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 21 AIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVM--ATVKKGKPELRKKVMPAIV 78
++MN +++ + L I SG+ L+ P AS+ + M A+ + P+ + V+ +V
Sbjct: 84 SMMNNNESNASPELSNIPHPASGNLLSPSPGASVSETSMNAASTSEPAPQKSRLVISQLV 143
Query: 79 VRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAI 114
+ KS+ + V F + + P G K + I
Sbjct: 144 LTNFKSYAGQQ-VIGPFNASFSAVVGPNGSGKSNVI 178
Database: Seq/AA.fsa
Posted date: Feb 8, 2013 12:45 PM
Number of letters in database: 40,655,052
Number of sequences in database: 85,676
Lambda K H
0.318 0.134 0.397
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 85676 Number of Hits to DB: 9,684,344 Number of extensions: 348816 Number of successful extensions: 650 Number of sequences better than 10.0: 33 Number of HSP's gapped: 645 Number of HSP's successfully gapped: 33 Length of query: 137 Length of database: 40,655,052 Length adjustment: 96 Effective length of query: 41 Effective length of database: 32,430,156 Effective search space: 1329636396 Effective search space used: 1329636396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)